Scaffold KVWGV2_10725578

Overview

Basic Information

• Taxon OID: 3300002242
• Scaffold ID: KVWGV2_10725578
• Source Dataset Name: Marine sediment microbial communities from Kolumbo Volcano mats, Greece - white/grey mat
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2403
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment → Marine Sediment Microbial Communities From The Hellenic Volcanic Arc

Source Dataset Sampling Location

• Location Name: Kolumbo Volcano, Greece
• Coordinates
  • Lat. (^o): 36.5
  • Long. (^o): 25.45
  • Depth (m): 494

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051457	Metagenome	144	Y
F105905	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
KVWGV2_107255783	F105905	N/A	MANLKAKPKGSVTPKVATGSLTYVSGKARSDHNVSRAKAVNGFTFEKALAHYATLYPKGAKTHLNYDINKIGSLVLK*
KVWGV2_107255786	F051457	AGG	MREYFEYIKPVCPHSLESYDNNRLLVLDYDPRSIEQYYVTLDRYDAILFKCHPSTDRDLLISIVEDLADDRPCAMWFWSHPDDEHYSTPVPSIIMQNKVNLKKARKEYFKKLNGK*