Scaffold KVWGV2_10717866

Overview

Basic Information

• Taxon OID: 3300002242
• Scaffold ID: KVWGV2_10717866
• Source Dataset Name: Marine sediment microbial communities from Kolumbo Volcano mats, Greece - white/grey mat
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11444
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (100.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment → Marine Sediment Microbial Communities From The Hellenic Volcanic Arc

Source Dataset Sampling Location

• Location Name: Kolumbo Volcano, Greece
• Coordinates
  • Lat. (^o): 36.5
  • Long. (^o): 25.45
  • Depth (m): 494

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006383	Metagenome	374	Y
F015346	Metagenome / Metatranscriptome	255	Y
F022555	Metagenome	214	Y
F059941	Metagenome	133	Y
F063682	Metagenome	129	N

Sequences

Protein ID	Family	RBS	Sequence
KVWGV2_1071786610	F006383	GGAGG	MLIKDKMWQVQQPGTILRARHSARRGQLALVLTKAYHEIKGTGTRGDHYVKMQIVSTGERIEELLTNANNCWDVVSEAKENN*
KVWGV2_1071786612	F022555	GGAG	VAITPKFKPGQLVRYGNPTHDLVGLVKSTQLARRRGDPVFVLVQWCGKYRQQEEYIPQSELKLVEGS*
KVWGV2_107178665	F059941	GGAGG	MKLGTLVQFAAHGVVMDTGYVSKYDEDPKYMWVECVKMGPQRVSKDSTMLEVLSESG*
KVWGV2_107178666	F063682	GGAGG	VNPGDLVRIRKTSIDHMSANWFIWHAEKMTPLVLIKELNKSYWNVLKPDGETVFIHKSHLTKRMY*
KVWGV2_107178667	F015346	GAG	MNPEWKRYKVGDLVAVASSRVLGIITKSNYWALDEYLGGEIEMVDVMFGSSVSRQYPVQYLVEAG*