Scaffold KVWGV2_10328247

Overview

Basic Information

• Taxon OID: 3300002242
• Scaffold ID: KVWGV2_10328247
• Source Dataset Name: Marine sediment microbial communities from Kolumbo Volcano mats, Greece - white/grey mat
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9613
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (62.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment → Marine Sediment Microbial Communities From The Hellenic Volcanic Arc

Source Dataset Sampling Location

• Location Name: Kolumbo Volcano, Greece
• Coordinates
  • Lat. (^o): 36.5
  • Long. (^o): 25.45
  • Depth (m): 494

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028360	Metagenome	192	Y
F032335	Metagenome	180	Y
F042854	Metagenome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
KVWGV2_1032824710	F042854	N/A	MEITLSEFEFIEKYTRRRMQQLRGEAPEQEPMDPFVEKYTSRRIREIRLERELTQRKIDIDNVALGGYTVATMEVYRPDET*
KVWGV2_1032824719	F028360	N/A	MKDYKPHITMLKVELKNEDENVLTIDMSDDFVKWFKIEHNLKRWAPKQFKQWLLMVLQGDKKS*
KVWGV2_1032824724	F032335	N/A	MKENASVKVSELKPGMLLRFKEPRIYKYLRDSGDDHWLDVGHTNLKNTIKYAHVGQPLMIYLGQKKMDAPSHYGEFVSVREVSIEGRKAWMWPDAWKYVEAV*