Scaffold KVWGV2_10224773

Overview

Basic Information

• Taxon OID: 3300002242
• Scaffold ID: KVWGV2_10224773
• Source Dataset Name: Marine sediment microbial communities from Kolumbo Volcano mats, Greece - white/grey mat
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1977
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment → Marine Sediment Microbial Communities From The Hellenic Volcanic Arc

Source Dataset Sampling Location

• Location Name: Kolumbo Volcano, Greece
• Coordinates
  • Lat. (^o): 36.5
  • Long. (^o): 25.45
  • Depth (m): 494

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005524	Metagenome	398	Y
F024106	Metagenome	207	Y
F073529	Metagenome	120	Y
F077179	Metagenome	117	N

Sequences

Protein ID	Family	RBS	Sequence
KVWGV2_102247731	F005524	N/A	KVQHFGTGSVGTVIDSSYEVETPFQQLCVQWEDDLAPHRDSWERREALSIIPHAPYDFHIAE*
KVWGV2_102247735	F024106	GAGG	MEESTFHSSFQVGDLITLKYHPGAPIAIVVSLDAIVFDRIQIQFFDTDRPEMAVPGQWKVVSRNASR*
KVWGV2_102247737	F073529	GGAGG	VKIGDLVILRTGRYNFAPQAGGRAKWVFTDVMGVITDDRGFVDGTAEYKVYTTDGKHTWSHIEDLRIPD*
KVWGV2_102247738	F077179	GGAGG	VTQDDYKPGDLILFFQGNSRFEEGPEEFGWIVHRDYDDPSEPAVMVGFPGRPDNLLXYYDXELREWEKAGTIEVKRG*