Scaffold KVWGV2_10028000

Overview

Basic Information

• Taxon OID: 3300002242
• Scaffold ID: KVWGV2_10028000
• Source Dataset Name: Marine sediment microbial communities from Kolumbo Volcano mats, Greece - white/grey mat
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1907
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment → Marine Sediment Microbial Communities From The Hellenic Volcanic Arc

Source Dataset Sampling Location

• Location Name: Kolumbo Volcano, Greece
• Coordinates
  • Lat. (^o): 36.5
  • Long. (^o): 25.45
  • Depth (m): 494

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002215	Metagenome / Metatranscriptome	582	Y
F089400	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
KVWGV2_100280001	F089400	N/A	DYVGFTVKEISAATNEIVFQRKDSYGATTIDTVTKTVVPAHRGFIVGRYLTTELRWQCSCQDFSRRDSYDLYSELTKRRFPTTTVRSTKPGQVLQPDGTLSXERDIPGTFRDLGFVAVNNYYQLPDYEDTAEFTVANLMYYQLRWCKHIYAAMFALKHDEGNDPINLLGAYLQNGPNITIDVVGHNLEVNTKIQITFTSGNAISGEYTVTSVPTPDSFVVIYPFSNLTSGYCTISNLKKHDYVGAWLLEPNXKPIGEGLTKFERTFEKEKEKLQAAVESLLLTKQNTKWSGQKEIIGNRGLPQSIADFDPSLLGMTLTDSTKRDASGNLSRDGKPVNLTNRMITLVNKLFNKSPTQLEDIKLGIVSKPLNEYSSDFEGGFIDSGTYVNGIPTDPVSSVSTIDCDTYFPLTDQDVVVDSDLYINI*
KVWGV2_100280003	F002215	N/A	VFAGLTQALGKFNKKLDRRFYNVESNLDKLKNEVLHDYVLKEDFLREMQAVHTKLDRILDHLLAKS*