NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold KVWGV2_10015122

Scaffold KVWGV2_10015122


Overview

Basic Information
Taxon OID3300002242 Open in IMG/M
Scaffold IDKVWGV2_10015122 Open in IMG/M
Source Dataset NameMarine sediment microbial communities from Kolumbo Volcano mats, Greece - white/grey mat
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2735
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Tenericutes → Mollicutes → Acholeplasmatales → Acholeplasmataceae → unclassified Acholeplasmataceae → Acholeplasmataceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment → Marine Sediment Microbial Communities From The Hellenic Volcanic Arc

Source Dataset Sampling Location
Location NameKolumbo Volcano, Greece
CoordinatesLat. (o)36.5Long. (o)25.45Alt. (m)Depth (m)494
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004479Metagenome / Metatranscriptome436Y
F022013Metagenome / Metatranscriptome216N

Sequences

Protein IDFamilyRBSSequence
KVWGV2_100151222F004479AGGAMHNSKILIGNSGDKVFLKGNKVIKEAGHYPEKFKQQMEFLMCCDHPNFIEVKPLSETSYEMKRYPTWYDKILIQPITTSLGQLENLISIIGKFDNVGADVKTQSYFDKLHLRTGYTYEGTFDACSAWGFVHGDLTVSNILHNTDFLFIDPRGTEEQNYYDYGKLMQSFVMEYESHIYNNPNKKYSKFCKEAEKVMYEWCDEYQLKFFLAVHLLGAVPFFELNERYELAGSFLKKGHELFDELEIKYTK*
KVWGV2_100151224F022013N/AMKNVKRVGFFKLGKSIKFNENSWGAIGGDCEPKQLINAIAKRNPNIEYWLLSPNDLGKVRSKEKPAVQSLFGPPVETETAAPSNVKEFHSTMKDRKSADEAAQKIKDLDLDFIFFYTGPSSTVNIENYINKVDGTGRVKSLDFFKYYAAPIIKAMNELEKKVPIVGLLVDNRYILACKDWNDNNRPTYYLAQNTFTKTEEFFCNPPLRDIDTIESTYEYSGIETVFLLDKKKYNTDELFQMKKTNSFMMLQNQGKGSGGMDRWDPVRDYIVENDIETDIYGKWDDEIKEKHPKWFKGEKRIETMTDELLATKYTFCVPIKEGMVTSKYA
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.