Scaffold KVWGV2_10014810

Overview

Basic Information

• Taxon OID: 3300002242
• Scaffold ID: KVWGV2_10014810
• Source Dataset Name: Marine sediment microbial communities from Kolumbo Volcano mats, Greece - white/grey mat
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3178
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment → Marine Sediment Microbial Communities From The Hellenic Volcanic Arc

Source Dataset Sampling Location

• Location Name: Kolumbo Volcano, Greece
• Coordinates
  • Lat. (^o): 36.5
  • Long. (^o): 25.45
  • Depth (m): 494

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020384	Metagenome / Metatranscriptome	224	N
F024807	Metagenome	204	N
F029468	Metagenome / Metatranscriptome	188	Y

Sequences

Protein ID	Family	RBS	Sequence
KVWGV2_100148104	F020384	N/A	MDYKKSKYEISLRKLXNILSEVLRSSGNSRQLDLDNRMRRAIRHIQIIKRTAPNNEDGDLAMVKAYQVYDRLQRLANYPQYFADNTRYAPQRVVSDRFXGYNARPASIXWDVAAMMAVPMGGPDRNWWRPPSRPAPVKHYTREELEIEYPAFTVSKKREDAT*
KVWGV2_100148105	F024807	GAGG	MTRRVMPFSLVFHDKDQQLTLALHDNPVILTRDEADALAFHLASFVEDMDSTRKPKPSAEGADIHAEAHGEMLMAQFDDDPNPYHGDYSED*
KVWGV2_100148106	F029468	AGGAGG	VKIRLKKQAEKDFDKADIEKKQLALSAACKDFVSEFIDCEGDVFYSXFSKGNLNAVXQYESSVRNSAMTKVGPEWDHDADVVGKWRYPHLRKDDD*