Scaffold KVWGV2_10013333

Overview

Basic Information

• Taxon OID: 3300002242
• Scaffold ID: KVWGV2_10013333
• Source Dataset Name: Marine sediment microbial communities from Kolumbo Volcano mats, Greece - white/grey mat
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10793
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (51.72%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment → Marine Sediment Microbial Communities From The Hellenic Volcanic Arc

Source Dataset Sampling Location

• Location Name: Kolumbo Volcano, Greece
• Coordinates
  • Lat. (^o): 36.5
  • Long. (^o): 25.45
  • Depth (m): 494

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016292	Metagenome	248	Y
F020445	Metagenome / Metatranscriptome	224	N

Sequences

Protein ID	Family	RBS	Sequence
KVWGV2_1001333321	F020445	AGGAG	MADNYDXSGALWKRQPKDSDVAGKKYPQYEGNLTVGGNKKKVAAWLNVEKTKDTQPDISLKISDFMEKKE*
KVWGV2_1001333325	F016292	N/A	MTNQPKILGDCYKKFGLQHTSKSQNTIPDDIRFRNYIVLTPKEKANLPANCSFTGGTIAHEVIQSIKCKNKTFKDAVKLIQNKITNYEAVDEKDKIKFNYIIENLEPLVQNHLDNIDEIPKQNWKAELEYTHWAKGISTYFLAYVDLVGSTNFGDIKNVFGTLSKTKSGYSYSKKKCPKVPYHSDCLQIALYSKLLPKHKPFLTYASDSDRILFTPENCVXLRPENLDYYYEELVLYQKCWEKKLELANGDIKTLALLCKPDFSEIRKNGFWWKGIDPDIIKRFRSYYE*