Scaffold KVWGV2_10011607

Overview

Basic Information

• Taxon OID: 3300002242
• Scaffold ID: KVWGV2_10011607
• Source Dataset Name: Marine sediment microbial communities from Kolumbo Volcano mats, Greece - white/grey mat
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5809
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (61.11%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment → Marine Sediment Microbial Communities From The Hellenic Volcanic Arc

Source Dataset Sampling Location

• Location Name: Kolumbo Volcano, Greece
• Coordinates
  • Lat. (^o): 36.5
  • Long. (^o): 25.45
  • Depth (m): 494

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000720	Metagenome / Metatranscriptome	923	Y
F004988	Metagenome / Metatranscriptome	416	Y
F030928	Metagenome	184	Y
F083388	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
KVWGV2_1001160710	F083388	GGAGG	MVGMLMQKRIANLEWVIKRCSPEFKEVWERKLEQLINRRVEMAHERMVENARSVH*
KVWGV2_1001160712	F004988	AGAAG	MVKLVETICPRCNGNGYIVVQNKDIDCPMCEEEFMHMGGKVTTHNGYVMLPIEQTRKNVEGGRESIARWSGETLPEKGKDGS*
KVWGV2_100116078	F000720	GAGG	MTLIKENXXVRKEIPNRMMSATFALPIXGRRVVGIVNYTATDSGLMPLAFWIKLKPTDSYLDRELRASGKLISRCLQHGESLKELVDTLSQDNVIGQMANYLHKNMEDIIMGRQPEKRQRELSTDPYAMKE*
KVWGV2_100116079	F030928	GGAG	MKEWLKTLEAYTSFSILGFTIFICLIVIVVNCKYIIKLESTIDTMWHEIEQVKETNIDLYQFIEEHKNDFD*