Scaffold KVWGV2_10011108

Overview

Basic Information

• Taxon OID: 3300002242
• Scaffold ID: KVWGV2_10011108
• Source Dataset Name: Marine sediment microbial communities from Kolumbo Volcano mats, Greece - white/grey mat
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27298
• Total Scaffold Genes: 60
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment → Marine Sediment Microbial Communities From The Hellenic Volcanic Arc

Source Dataset Sampling Location

• Location Name: Kolumbo Volcano, Greece
• Coordinates
  • Lat. (^o): 36.5
  • Long. (^o): 25.45
  • Depth (m): 494

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013576	Metagenome	270	Y
F026155	Metagenome	199	N
F064087	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
KVWGV2_1001110812	F026155	N/A	MYSIIWFRNDRWQIFTNEIWQTEKEALDYAKRGNFKKKDKWKVVLYNKKYYI*
KVWGV2_1001110828	F064087	AGG	MTDISKTTIKETIISNLVKEIVSNGGDKEHITDKLATLPRNTLTKAIQEKDNPYYCSLALSKQDEKGKGVLVAIPRNIISDIRKKTHFGYQQKVNKTKRDHDRKIKSKDLLRGDSKD*
KVWGV2_1001110839	F013576	N/A	MFKKIDKELEHMQPFEYICSDGFIGSNILPDHVKKFIADKKATQKEQEMIDTWKDEIKLKQGEKKHDNNK*