Scaffold KVWGV2_10000023

Overview

Basic Information

• Taxon OID: 3300002242
• Scaffold ID: KVWGV2_10000023
• Source Dataset Name: Marine sediment microbial communities from Kolumbo Volcano mats, Greece - white/grey mat
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 61351
• Total Scaffold Genes: 104
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 47 (45.19%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment → Marine Sediment Microbial Communities From The Hellenic Volcanic Arc

Source Dataset Sampling Location

• Location Name: Kolumbo Volcano, Greece
• Coordinates
  • Lat. (^o): 36.5
  • Long. (^o): 25.45
  • Depth (m): 494

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001066	Metagenome / Metatranscriptome	788	Y
F001235	Metagenome / Metatranscriptome	741	Y
F001625	Metagenome / Metatranscriptome	661	Y
F004880	Metagenome / Metatranscriptome	420	Y
F021393	Metagenome / Metatranscriptome	219	N
F049929	Metagenome / Metatranscriptome	146	Y
F064085	Metagenome	129	Y
F064801	Metagenome / Metatranscriptome	128	Y
F081741	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
KVWGV2_1000002313	F049929	N/A	MALKSFKMDWEGKSETIEYEDDITYGEMEAILTHAIDLSDVSKPKVNIPQYRNHLLLKVLRTAPFTVGDAVALRNIKQKQASIIMKEVMKDYPLATYLGDWVETFTGLPIENDPNIQSTTFVQ*
KVWGV2_1000002319	F001625	N/A	MALTITTSDWTNANVRKTLSWQAALTSKLRVYAIKVTFGSGDNYATGGVSADLKEGRISTLVAVIPTYSNCLQEVRYDKANEKIQLYNVGGGAESKFVEVTNTSSTCASKVFEFLVIGY*
KVWGV2_100000232	F004880	GGAG	MSQEYYDHLNVGEKYTCDKCQVAILGHHEYDQYIKFQYHYCEPCWNYMHLKKGTCGQCGSTMTNRSEQPSIFISCGCGNKVELKWQ*
KVWGV2_1000002321	F021393	N/A	MVEEINSETQVDTVEKSADTLVETEKSFQQTVKSGIDTLTEVVQSIAESQLASTEAIQGLATRVKALETPTDLPLSPKGTVAGDDVGAKVTVPDTYQSNSVQAGLDDDRSGSMKPHTDKGGLKMQQKADDTELVEKSEHTFTTETPRPNAALETVEKSQVDSSQILDDARSGGYDGLSNVAKGILSGKYYTPSPDEVGVY*
KVWGV2_1000002324	F081741	GGA	MVEPLLVVVVATVTGAILNTIRGFLHSDEGYDIKKFFGAVIVSGFAGIAIAQTIGLSGIDTLGLGLIGLTAGFSVDYAVSKAKKIAE*
KVWGV2_1000002328	F001235	AGG	MATKLNVDKGGQDIGKKLWKKHQDDEYTHVNNYKEAICLNCFTKDAAAATIAMICGECAGKRGREPLLAKISDKYYGLCLFCGEHKFHLEEINARFCHPCHRKIADVTKDYNKKGGAMGTDPFWLRMRKIHGKDWKIIMSGETGRKV*
KVWGV2_1000002330	F064801	N/A	MGVKDTFRTVVKNLSTLNKSQTNSTTRPSMAQPYMSTDTGAKLPIFPFPLIMIYELADNIDALRIPIETLNREMFKNGFEVVEKYKFKCSNCSKEFQYKPLKNDNPDDQPFEQNQDNESSQVPRSDAKKAIPTELNETHEMECDSCGNTNMLRPIPENRKKLEDLLENPVNGNDQTLEDLARQLERDLEIADNAYCLVLKSYDIDDRTGKINRKTSKIKEFLRIDPPQVAMIADSDGRIGYDDKRNKVFVCPRFEHRDKRLTTDKCDRCGAEALKAVIEVNSVYSVGIPQPKRVVYGEGEVIWKAGKYKPSLIYGFSPIYSIWSKAMALSHMDEYIRKYFDKMRPPRGMLVIASRNYETFRKSWDVLEQKATEDPYMIHPLLVESDKGGKNMAQWIDFTGSLKELEFTVIRKELRQIIGAVFGVLPLYYGELPSGWSQEGLQVTITNRAVKWGQDILYKAFLYKISKLVGVEDWELRLKGGEENDKLRDLQIQGVEIQNMAAMQAMGFEVTRTHTGEFKVSKNPLLSPEAMILGLPQEEKPNTSGSKGRGRGTAAPKEDQQSMDGQPKKQRPSDKGGIGQGHPASGSGTSQSKKMNLEPKPYPDGITSANFEIVKKTLQDSIDFDWTKKKTVEELRSKAFMTVREARDVVKSELSDVKRWEDDESE*
KVWGV2_1000002393	F001066	N/A	LGDLFKIKPIDGKNIVVEDKRKTVSPFNSAKHFKDANIPAYCNQCMYRSVESGGNGRCPKYEKDAVCSVREDFIKVINQIDTRKPEDVKSMVDMIAKLSFENVLMALTQAKMDGNIPDRNTKSEINTFLNIVKTLTDLSTKIMVTETRSVDDKTGDITSIFKQIKAQKNDG*
KVWGV2_1000002398	F064085	N/A	LTDIKIVASGTCEECGHNQESHEGNNICDIEGCDCTNIGSY*