Scaffold JGI24034J26672_10004764

Overview

Basic Information

• Taxon OID: 3300002239
• Scaffold ID: JGI24034J26672_10004764
• Source Dataset Name: Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1931
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: Kellogg Biological Station, Michigan, USA
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F094205	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24034J26672_100047644	F094205	N/A	GDGSSVPSDFPKGSLAPTGSSEHALGCGLSSQLNALGEPSLFPLPRSAEVYRVLWLRSGAHPVSVRFERQGDAGQLRGAQTGGKGLGDPGDLLEESSAFASPAQVQELVARIEATHLWGDPAPAAKLPSIESGSLWVFEGARGGQYRVRILQRDALAQDPAFNALGRALLSASGLHVQGGVY*