Scaffold JGI20169J29049_11441750

Overview

Basic Information

• Taxon OID: 3300002238
• Scaffold ID: JGI20169J29049_11441750
• Source Dataset Name: Nasutitermes corniger P1 segment gut microbial community from laboratory colony in Florida, USA - Nc150 P1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4533
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location

• Location Name: laboratory colony in Florida, USA
• Coordinates
  • Lat. (^o): 26.0625
  • Long. (^o): -80.2332

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001284	Metagenome	731	Y
F005119	Metagenome / Metatranscriptome	411	Y
F033855	Metagenome	176	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI20169J29049_1144175010	F005119	GGA	LVKNEYLTRHDKVCAHLHYSICKALGIETTDKWYTHMPKPVYEQEDITVRWNQAVYTQRSYSK*
JGI20169J29049_1144175011	F001284	N/A	VAIPADKNVVQKEVEKKLKYKSLGTEIQQMWNLKCTIIPVITGATGIVMRSLRENLEDIPGKHSINSLQNTAILGTSHTIQKVLQCEA*
JGI20169J29049_114417503	F033855	GGAG	MKAVLWRFTYIKEKTLGENYKEAYELLRDRSPMTRINIGAKLLLNQKNYILKAKRITAVEIDEIKENISLTIWNDREVHTKGMNCDKMDTNDKEHQKREQESNNTGLGKIENNKHLMAEGKQHTVKNKLKVDLKIMLHKVRRL*