Scaffold JGI20169J29049_11359402

Overview

Basic Information

• Taxon OID: 3300002238
• Scaffold ID: JGI20169J29049_11359402
• Source Dataset Name: Nasutitermes corniger P1 segment gut microbial community from laboratory colony in Florida, USA - Nc150 P1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1765
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Polyneoptera → Dictyoptera → Blattodea → Blattoidea → Termitoidae → Rhinotermitidae → Coptotermitinae → Coptotermes → Coptotermes formosanus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location

• Location Name: laboratory colony in Florida, USA
• Coordinates
  • Lat. (^o): 26.0625
  • Long. (^o): -80.2332

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001859	Metagenome	625	Y
F051233	Metagenome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI20169J29049_113594021	F001859	N/A	MDLTDSFKWEDLPTRDADTGHLRAAGWIPLTMKCSRIVFIGLLSCHTVQSTIRIVTNHETLIIAWYPFDWTVSPFYELVNISQVTISKTIFSISILILLF*
JGI20169J29049_113594023	F051233	N/A	MNKEGTKLKGLSESRFGSMILLFKIAGIPVQMKKISTIYGVYMLTNIICTFSTYIGMFFDVYIHRNDLGHAMRTMRVLIPFTNIIWIYSNCR*