NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI20169J29049_11232257

Scaffold JGI20169J29049_11232257


Overview

Basic Information
Taxon OID3300002238 Open in IMG/M
Scaffold IDJGI20169J29049_11232257 Open in IMG/M
Source Dataset NameNasutitermes corniger P1 segment gut microbial community from laboratory colony in Florida, USA - Nc150 P1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1217
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location
Location Namelaboratory colony in Florida, USA
CoordinatesLat. (o)26.0625Long. (o)-80.2332Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000031Metagenome4897Y
F001172Metagenome757Y

Sequences

Protein IDFamilyRBSSequence
JGI20169J29049_112322571F000031AGGGGGVTGRQGRRRRKLLDDLKERRGCSHLKEEALDRSMWGARFGRGFGPVLDRLLNE*
JGI20169J29049_112322573F001172N/AMHQQFNIQQLYALPTLYLSVLYLSEKNSDLCHLQHKLIGFYNRDENCLLRGTDWVYK*

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