Scaffold JGI20169J29049_11065697

Overview

Basic Information

• Taxon OID: 3300002238
• Scaffold ID: JGI20169J29049_11065697
• Source Dataset Name: Nasutitermes corniger P1 segment gut microbial community from laboratory colony in Florida, USA - Nc150 P1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 924
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location

• Location Name: laboratory colony in Florida, USA
• Coordinates
  • Lat. (^o): 26.0625
  • Long. (^o): -80.2332

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000026	Metagenome	5546	Y
F004572	Metagenome	433	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI20169J29049_110656971	F004572	N/A	VHRKNILIYIQQDETLHSLFYLETAIHVSGGTTTHHQERKQLYLQH
JGI20169J29049_110656973	F000026	N/A	MQKSQSLFNLTTALHVSGVTITHLQEHKTTVTTVSGNRYTILLSAAIVEELELKPIPALPR*
JGI20169J29049_110656974	F000026	N/A	HKSQSLYNLTTALHVSGVTITHLQEHKTTVTTASGNRYTLLLSAAIVEELELV*