Scaffold KVRMV2_101238355

Overview

Basic Information

• Taxon OID: 3300002231
• Scaffold ID: KVRMV2_101238355
• Source Dataset Name: Marine sediment microbial communities from Santorini caldera mats, Greece - red mat
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1519
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment → Marine Sediment Microbial Communities From The Hellenic Volcanic Arc

Source Dataset Sampling Location

• Location Name: Santorini caldera, Greece
• Coordinates
  • Lat. (^o): 36.5
  • Long. (^o): 25.45
  • Depth (m): 336

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019393	Metagenome	230	Y
F024303	Metagenome	206	N
F048575	Metagenome	148	N
F083382	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
KVRMV2_1012383551	F048575	N/A	LQNSIILDEEYEYEVSVLDLWKVSGEEDPYSAIHLAMNTFRYPNPNVPDEEIEEHLSELWDERWSEYYV*
KVRMV2_1012383552	F019393	GGAG	MYSELRTYTSIPEFIQAHEGLWHMLDAKYKKLDKETVLIDNTKWKLVKGNMTCLTK*
KVRMV2_1012383553	F083382	GGA	MPDKIKDRDTLVSVDDAGDVAKKEYESYIKRQEKDVADDLDNQYYSEGEQYD*
KVRMV2_1012383554	F024303	AGGAG	MTENKFTNWLHKELKQQQKEKETIMAKAIKKDGAMILDEAQKKHLLDLFNAGNDFSRSYRESGIKYVTAWEIEKLLDLLDDMKDLYGIAPTISKHVDNDGDHYPNHWSDHVWSDDPRAWKRED*