NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold KVRMV2_101195000

Scaffold KVRMV2_101195000


Overview

Basic Information
Taxon OID3300002231 Open in IMG/M
Scaffold IDKVRMV2_101195000 Open in IMG/M
Source Dataset NameMarine sediment microbial communities from Santorini caldera mats, Greece - red mat
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3044
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment → Marine Sediment Microbial Communities From The Hellenic Volcanic Arc

Source Dataset Sampling Location
Location NameSantorini caldera, Greece
CoordinatesLat. (o)36.5Long. (o)25.45Alt. (m)Depth (m)336
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002330Metagenome / Metatranscriptome570Y
F004879Metagenome / Metatranscriptome420Y
F043344Metagenome / Metatranscriptome156Y
F049689Metagenome146Y

Sequences

Protein IDFamilyRBSSequence
KVRMV2_1011950002F002330N/AMFQFPINMLILDIMLKYINQINKALKIGDEFTIYYAPTYTKDGQDQTEVYEYHQYEVNSRLARWDEGCKINKTGSLTYFDVEKNSHRTAIQTLQPVRIYLNKQMYVWKEVK*
KVRMV2_1011950003F049689AGGAMQDKYFVVRVWFFEYDKKDQYQYQIVSDRAYPMDKAVDIKMAQDIMNTNENISFQIQKVSLMDLGKSKIAS*
KVRMV2_1011950005F004879AGGAMSKGMELKLHQREHFESKIDKLLEPEIEREELKLKTTINKILDKGVDKFGKSIGADKVIARLKKAEEEKRVASRQAYMFFNAKASSIVSYNKAKEYKFDRDDKETISVKDCISQLNKWAEKQAEQFAETTPQGQRLAFLKALSESAKDKVKEASVSDELKDTLDNLFKMVGVAWERKLPALPRK*
KVRMV2_1011950007F043344GAGMGDRVSISFQQKAEWYVKRKKEEHMEQSPALFHHWGGTHFPKFAFQWFKKVKEKYGKNGGDPFTRMEPRNLMVQFIAHLRNHEELRYDSFNKKTKGYDTDDQLLSYSIYLGKDSMDGDNSDNGHYTIDVDNVKMYNDKGESIE*

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