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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300002231 Open in IMG/M |
| Scaffold ID | KVRMV2_101195000 Open in IMG/M |
| Source Dataset Name | Marine sediment microbial communities from Santorini caldera mats, Greece - red mat |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3044 |
| Total Scaffold Genes | 8 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (75.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment → Marine Sediment Microbial Communities From The Hellenic Volcanic Arc |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Santorini caldera, Greece | |||||||
| Coordinates | Lat. (o) | 36.5 | Long. (o) | 25.45 | Alt. (m) | Depth (m) | 336 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002330 | Metagenome / Metatranscriptome | 570 | Y |
| F004879 | Metagenome / Metatranscriptome | 420 | Y |
| F043344 | Metagenome / Metatranscriptome | 156 | Y |
| F049689 | Metagenome | 146 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| KVRMV2_1011950002 | F002330 | N/A | MFQFPINMLILDIMLKYINQINKALKIGDEFTIYYAPTYTKDGQDQTEVYEYHQYEVNSRLARWDEGCKINKTGSLTYFDVEKNSHRTAIQTLQPVRIYLNKQMYVWKEVK* |
| KVRMV2_1011950003 | F049689 | AGGA | MQDKYFVVRVWFFEYDKKDQYQYQIVSDRAYPMDKAVDIKMAQDIMNTNENISFQIQKVSLMDLGKSKIAS* |
| KVRMV2_1011950005 | F004879 | AGGA | MSKGMELKLHQREHFESKIDKLLEPEIEREELKLKTTINKILDKGVDKFGKSIGADKVIARLKKAEEEKRVASRQAYMFFNAKASSIVSYNKAKEYKFDRDDKETISVKDCISQLNKWAEKQAEQFAETTPQGQRLAFLKALSESAKDKVKEASVSDELKDTLDNLFKMVGVAWERKLPALPRK* |
| KVRMV2_1011950007 | F043344 | GAG | MGDRVSISFQQKAEWYVKRKKEEHMEQSPALFHHWGGTHFPKFAFQWFKKVKEKYGKNGGDPFTRMEPRNLMVQFIAHLRNHEELRYDSFNKKTKGYDTDDQLLSYSIYLGKDSMDGDNSDNGHYTIDVDNVKMYNDKGESIE* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |