Scaffold KVRMV2_100349110

Overview

Basic Information

• Taxon OID: 3300002231
• Scaffold ID: KVRMV2_100349110
• Source Dataset Name: Marine sediment microbial communities from Santorini caldera mats, Greece - red mat
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1936
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomonadales → Hyphomonadaceae → Henriciella → unclassified Henriciella → Henriciella sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment → Marine Sediment Microbial Communities From The Hellenic Volcanic Arc

Source Dataset Sampling Location

• Location Name: Santorini caldera, Greece
• Coordinates
  • Lat. (^o): 36.5
  • Long. (^o): 25.45
  • Depth (m): 336

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003531	Metagenome	481	Y
F014969	Metagenome	258	N
F025411	Metagenome	202	Y

Sequences

Protein ID	Family	RBS	Sequence
KVRMV2_1003491104	F003531	GGAG	MKRKKWTENETEXARQLLKXHSYATVGKMLHRSKNSVIGQFYREKVMNGYVPDPFSKYTRKKERNIHVDN*
KVRMV2_1003491105	F025411	GAG	MSITRVYRDRDNNIKVEKFSFEEVKKDLTKFFSHDNRISNRKDKNDNKKIIKDTSRH*
KVRMV2_1003491109	F014969	N/A	MISNYPFGKKNDRPNYYYTQDVYSDGQGITGRMKK