Scaffold KVRMV2_100121006

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold KVRMV2_100121006

Scaffold KVRMV2_100121006

Overview

Basic Information
Taxon OID	3300002231 Open in IMG/M
Scaffold ID	KVRMV2_100121006 Open in IMG/M
Source Dataset Name	Marine sediment microbial communities from Santorini caldera mats, Greece - red mat
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4051
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment → Marine Sediment Microbial Communities From The Hellenic Volcanic Arc

Source Dataset Sampling Location
Location Name	Santorini caldera, Greece
Coordinates	Lat. (^o)	36.5	Long. (^o)	25.45	Alt. (m)		Depth (m)	336
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F025587	Metagenome / Metatranscriptome	201	N

Sequences

Protein ID	Family	RBS	Sequence
KVRMV2_1001210064	F025587	AGG	MTVTKSDFDPKCFGSQYQDPPDTLHFQFDGVRCDNYVYRYVLVDKFRPNKIDSRSKKTEEELGKSGKEIADGYLPLVLKQETKPGLIDKIKKIFSNG*

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