Scaffold KVRMV2_100117118

Overview

Basic Information

• Taxon OID: 3300002231
• Scaffold ID: KVRMV2_100117118
• Source Dataset Name: Marine sediment microbial communities from Santorini caldera mats, Greece - red mat
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10707
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (20.69%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment → Marine Sediment Microbial Communities From The Hellenic Volcanic Arc

Source Dataset Sampling Location

• Location Name: Santorini caldera, Greece
• Coordinates
  • Lat. (^o): 36.5
  • Long. (^o): 25.45
  • Depth (m): 336

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025718	Metagenome	200	Y
F029925	Metagenome / Metatranscriptome	187	Y
F060426	Metagenome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
KVRMV2_10011711816	F029925	N/A	MFILKSILTQAGSVWQVESIAMRERDAKRLLKRRQATNDGSRRYGLFPAN*
KVRMV2_10011711817	F025718	N/A	MIKNDKQVNGFIAKVNIVDRKTGDIVARNQILKCEHHDSVDALNRDLAKFGLPRKFEFIEWVA*
KVRMV2_10011711828	F060426	N/A	MIKNDTKLKGFNDLDFKPHAGFVDGKAIQAKLTFGQRDKHNQDQFTISVVQNIGDGTGLYGDHSDNTYEVAMWFQDRDSMLPLGLSDDVLAWQTPLQVTQLMHQAQLNDFAWVNLLHSLRDQHRKDLDLDI*