NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold KVRMV2_100079399

Scaffold KVRMV2_100079399


Overview

Basic Information
Taxon OID3300002231 Open in IMG/M
Scaffold IDKVRMV2_100079399 Open in IMG/M
Source Dataset NameMarine sediment microbial communities from Santorini caldera mats, Greece - red mat
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1586
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment → Marine Sediment Microbial Communities From The Hellenic Volcanic Arc

Source Dataset Sampling Location
Location NameSantorini caldera, Greece
CoordinatesLat. (o)36.5Long. (o)25.45Alt. (m)Depth (m)336
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010829Metagenome / Metatranscriptome298Y
F041432Metagenome / Metatranscriptome160N

Sequences

Protein IDFamilyRBSSequence
KVRMV2_1000793992F041432GGAGMAEQATELKLIGGLFRNQSXKGDVYYSGKGEDGTQYVLFRNAXWKEGAXXKPXXRXHXKVPXGXXXSXTMD*
KVRMV2_1000793994F010829GGAGMGNLADHRRLREEQGLYKEDPGTGEYTKQEANYIPFLGNNPSEEKPAIYTGRFTVSDGSIELEAKRSGGKLHITCLADEKHNRAIFECVERFITAIFDGSAREIKEAEAEDSQIDKLRKELSQIEDERDDLVETLQNLKKIME*

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