Scaffold KVRMV2_100038261

Overview

Basic Information

• Taxon OID: 3300002231
• Scaffold ID: KVRMV2_100038261
• Source Dataset Name: Marine sediment microbial communities from Santorini caldera mats, Greece - red mat
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25485
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment → Marine Sediment Microbial Communities From The Hellenic Volcanic Arc

Source Dataset Sampling Location

• Location Name: Santorini caldera, Greece
• Coordinates
  • Lat. (^o): 36.5
  • Long. (^o): 25.45
  • Depth (m): 336

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003889	Metagenome	463	Y
F031452	Metagenome / Metatranscriptome	182	Y
F040584	Metagenome	161	Y

Sequences

Protein ID	Family	RBS	Sequence
KVRMV2_10003826112	F040584	N/A	MKNQSYIQGSPKKTSQGQGKHSKSNHGRKKLRGQGK*
KVRMV2_10003826119	F031452	GGAGG	MADFGDIVDGVFVLSEEQVKIRKYGFSPIKASGIPTVYHAGDVVNLPYSGGEKSSIEAXGXCWAAFATGT*
KVRMV2_10003826139	F003889	N/A	KRETNVMGPEYVAIALTAVVSAITAGGWTAGKILERQTERVKQAFEYINSQKRRIDLLEDQINRMPIDYVLKVDFLREIQGLHDHFKQINTKLDKLIEKLLTK*