Scaffold KVRMV2_100026087

Overview

Basic Information

• Taxon OID: 3300002231
• Scaffold ID: KVRMV2_100026087
• Source Dataset Name: Marine sediment microbial communities from Santorini caldera mats, Greece - red mat
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20154
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (72.73%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → unclassified Nitrosopumilaceae → Nitrosopumilaceae archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment → Marine Sediment Microbial Communities From The Hellenic Volcanic Arc

Source Dataset Sampling Location

• Location Name: Santorini caldera, Greece
• Coordinates
  • Lat. (^o): 36.5
  • Long. (^o): 25.45
  • Depth (m): 336

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007003	Metagenome / Metatranscriptome	360	Y

Sequences

Protein ID	Family	RBS	Sequence
KVRMV2_10002608729	F007003	AGGA	LPINFTTKNIDQEKYIKIIRRIIVLNGNNGEDLSGYQAWVRFSRDWTLNIIPVTEQYDYERYYKHLNVETSSGIAWGVTGQKVIYMFVNDSGNTFITRQNIMPLGHELLHALYQDEVGTQHITRLYDAPEGKAGTTGARATVIVHDNWYGTKIQLKCGFVGV*