Scaffold KVRMV2_100013982

Overview

Basic Information

• Taxon OID: 3300002231
• Scaffold ID: KVRMV2_100013982
• Source Dataset Name: Marine sediment microbial communities from Santorini caldera mats, Greece - red mat
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3315
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (41.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment → Marine Sediment Microbial Communities From The Hellenic Volcanic Arc

Source Dataset Sampling Location

• Location Name: Santorini caldera, Greece
• Coordinates
  • Lat. (^o): 36.5
  • Long. (^o): 25.45
  • Depth (m): 336

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003020	Metagenome / Metatranscriptome	513	Y
F004988	Metagenome / Metatranscriptome	416	Y
F030928	Metagenome	184	Y

Sequences

Protein ID	Family	RBS	Sequence
KVRMV2_1000139825	F030928	GGAG	MKEWLKTLEEYTSFSILGFTIFICLIVIVVNCKYIIKLESTIDTMWHEIEQVKETNIDLYQFIEEHKNDFD*
KVRMV2_1000139828	F004988	N/A	MVKLVETICPRFNGNGYIVVQNDDIDCPMCEEEFMHMGGKVTTHNGYVMLPIEQTRKNVEGGRESIARWSGETLPEKGKDGS*
KVRMV2_1000139829	F003020	AGGAG	MPDTSSFKSVSVSVTTHNQXKTLAENRFEVPVSIQKVIDFMLEKELKKKNGKTR*