NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold C687J26845_10011925

Scaffold C687J26845_10011925


Overview

Basic Information
Taxon OID3300002223 Open in IMG/M
Scaffold IDC687J26845_10011925 Open in IMG/M
Source Dataset NameSoil microbial communities from Rifle, Colorado - Rifle CSP2_plank lowO2_1.2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4127
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Unclassified → Soil → Soil Microbial Communities From Rifle, Colorado, Usa

Source Dataset Sampling Location
Location NameRifle, Colorado, United States
CoordinatesLat. (o)39.534762Long. (o)-107.782602Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023552Metagenome / Metatranscriptome209Y

Sequences

Protein IDFamilyRBSSequence
C687J26845_100119253F023552AGGAMTNYQDGTEGANEFIARGADTPDVGTDTGTLARELRTLRKRKGGRVKKPTRIERSRKLHDAIVGLVQELQSAGFASITSLPGPLAMLGPEIEDPKTGGKIGHVQESLAVYIQRLSVDDNFFQRPPFDHVTDPIYRRLIRDFIDGAAMPESKIAALSWSGGVRSLAAPDLRFSIIDGLQRLYCFLIAILLVWRREQLAQDGLIPEEAWNFFAASVNRLGDPPSATEKLLERVIRYEIFYAISLAGLLHYMVTFNSSQRRMSLRVQLEIMKKPLIEHLKSEGIPIWEDLGRMPGEQRPKEKFLASDIVLATQAFITHNAHVTKAFETERFLDENQPYLDNIGDISDIMRMLKRISGEVHAKIAQAYEANLNQRYLMTTGDPFLLGFVAACGYVRNRSSMEILDKALDRLLGEFERAETDPLRFDDYQRALDMIHASRGKEARRLVDDTFRRFFLGVTTDLDWLDTASQITGGVAH*

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