Scaffold C687J26845_10002373

Overview

Basic Information

• Taxon OID: 3300002223
• Scaffold ID: C687J26845_10002373
• Source Dataset Name: Soil microbial communities from Rifle, Colorado - Rifle CSP2_plank lowO2_1.2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10931
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (70.83%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaU1.Bin231 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Unclassified → Soil → Soil Microbial Communities From Rifle, Colorado, Usa

Source Dataset Sampling Location

• Location Name: Rifle, Colorado, United States
• Coordinates
  • Lat. (^o): 39.534762
  • Long. (^o): -107.782602

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034095	Metagenome / Metatranscriptome	175	Y

Sequences

Protein ID	Family	RBS	Sequence
C687J26845_100023731	F034095	N/A	AIIVLSTRSTFASIGSEISARGGYVAGGRNIGPATGQWTVGASAKQYKFTYTTAGLVFTASGSSLINIRFALIRNSTGAGAGKVLCFASLSSAQFTIASPNTLSILPAATGVFTLA*