Basic Information | |
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Taxon OID | 3300002221 Open in IMG/M |
Scaffold ID | JGI24817J26689_1026044 Open in IMG/M |
Source Dataset Name | Marine microbial communities from oxygen minimum zone in mesopelagic equatorial Pacific - METZYME_3_300m |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1102 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Oxygen Minimum Zone In The Mesopelagic Equatorial Pacific |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | 8.0 | Long. (o) | -156.0 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F010942 | Metagenome / Metatranscriptome | 297 | Y |
F101352 | Metagenome / Metatranscriptome | 102 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
JGI24817J26689_10260441 | F101352 | N/A | KKKGAWDKYSPDALGRQFRVESVDAVAEPNLTPDDTFAGVDVFNVNDDEYNNCXHGKKXHQRWXNYVDXDSDSGKRXYGYAKKXPKKSIIVQHDKTGHMIYLKKYDMGGES* |
JGI24817J26689_10260444 | F010942 | GAGG | MPDQSRESEKQILSLAKDVEHLQYVINELEKECDFVKKHFTTKNTERLDDIKLIHSRVDKHLQTDLEFHETVRKKITERFEILDERIRHLDRWKWATWGALIVIGALCGYFV |
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