Scaffold MLSBCLC_10208481

Overview

Basic Information

• Taxon OID: 3300002220
• Scaffold ID: MLSBCLC_10208481
• Source Dataset Name: Wastewater microbial communities from Syncrude, Ft. McMurray, Alberta - West In Pit SyncrudeMLSB2011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: McGill University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1862
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Industrial Wastewater → Petrochemical → Unclassified → Hydrocarbon Resource Environments → Hydrocarbon Resource Environments Microbial Communities From Canada And Usa

Source Dataset Sampling Location

• Location Name: Syncrude, Ft. McMurray, Alberta
• Coordinates
  • Lat. (^o): 57.02
  • Long. (^o): -111.55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020863	Metagenome	221	Y

Sequences

Protein ID	Family	RBS	Sequence
MLSBCLC_102084811	F020863	AGGAG	MQTKMEDLHRLVGVLEELVKPLLEGEEVPDVYESMKRPHLVLQAGSKTYGRAFRIHFTGGSHYGSGHWEPRGFSDYLGGTKAEAERTLRSLIAGIRTGLMVAERGNE*