Scaffold MLSBCLC_10035034

Overview

Basic Information

• Taxon OID: 3300002220
• Scaffold ID: MLSBCLC_10035034
• Source Dataset Name: Wastewater microbial communities from Syncrude, Ft. McMurray, Alberta - West In Pit SyncrudeMLSB2011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: McGill University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2467
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Industrial Wastewater → Petrochemical → Unclassified → Hydrocarbon Resource Environments → Hydrocarbon Resource Environments Microbial Communities From Canada And Usa

Source Dataset Sampling Location

• Location Name: Syncrude, Ft. McMurray, Alberta
• Coordinates
  • Lat. (^o): 57.02
  • Long. (^o): -111.55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F055287	Metagenome / Metatranscriptome	139	N
F066267	Metagenome / Metatranscriptome	127	N
F080647	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
MLSBCLC_100350341	F066267	N/A	MVISKITKLLVKHYPDVVLVALKPDAKNWKAGCEFMVEIDGHKYYKFRDSGDVPLVRYKEIQAVLIQLDNRLTSDELTSILQIARESVVAAIEGQSRKERGKGLQQCLWAIQEAESRHKELGLHTDLIVELAALNLIRDDENPFEINETIQAEKLRLFKREFVNHDFFLSAGM
MLSBCLC_100350342	F080647	N/A	MTTLLLTSLFIFGLWLSTAEGMILDDLRWRFISQFPELAKPVIDCPTCMASLYGTIAYWGDVIIANQPVDALTAIGWPIFVVCLAGLNGIILKLAKWS*
MLSBCLC_100350344	F055287	AGG	MNWVGFILRHWGIFALIAAFILGKQSCNYKAEAERHASNYEAIQQNTTATARTLTLTNQQLQAENKRLLDSLNIKGGRVEFVYTTRWRTKIDSFEVEVERWHIETMPCPVVSFAVDTMCMKFSAIIEHDRPAVVTIETDYELNVVGYWERPGKWFGAKWWNGLIGKKDSYVKISSPCFPDSSVYLNKFSKAQ*