NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold SCADCLC_10109497

Scaffold SCADCLC_10109497


Overview

Basic Information
Taxon OID3300002219 Open in IMG/M
Scaffold IDSCADCLC_10109497 Open in IMG/M
Source Dataset NameTailings pond microbial communities from Northern Alberta -Short chain hydrocarbon degrading methanogenic enrichment culture SCADC:
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMcGill University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1875
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Industrial Wastewater → Petrochemical → Unclassified → Hydrocarbon Resource Environments → Hydrocarbon Resource Environments Microbial Communities From Canada And Usa

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011496Metagenome290Y
F053314Metagenome / Metatranscriptome141N

Sequences

Protein IDFamilyRBSSequence
SCADCLC_101094972F053314N/AMQSTILVRSNVVVRVWAGEQLLRTCRAHNMWGTAGLNALRNWLAGVAGTPITHIAWMDAGGVERARDIVTQRDVTTDGSLLLRQYLPSATSANGYTLTTVRAYNAQSAGTLFAEAVFDVTGVAKTDSIQITVEWTHAFADAGA*
SCADCLC_101094974F011496N/AMADAKTSFWTPRTVAVVIGAVLLIAGLFWLASLPQNKFVHADLLEPT*

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