Scaffold metazooDRAFT_1332983

Overview

Basic Information

• Taxon OID: 3300002206
• Scaffold ID: metazooDRAFT_1332983
• Source Dataset Name: Freshwater microbial communities from San Paulo Zoo lake, Brazil - OCT 2012
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1095
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Lake → Freshwater Microbial Community From Sao Paulo Zoo Lake, Brazil

Source Dataset Sampling Location

• Location Name: Sao Paulo, Brazil
• Coordinates
  • Lat. (^o): -23.651072
  • Long. (^o): -46.620675

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002162	Metagenome / Metatranscriptome	588	Y
F002357	Metagenome / Metatranscriptome	567	Y
F007469	Metagenome / Metatranscriptome	350	Y

Sequences

Protein ID	Family	RBS	Sequence
metazooDRAFT_13329831	F002357	N/A	ILIQSTLWRDSKDAAPAVSNVAFGSRETYIPNMKKFYVEDTATSALGRAIILLKGSDKTATKDDMKKVEANPTFKEKLEARQNMYGKPGSKSAQIETILRDSFEADKKPAPVAWSVGDVVAEIGASIPNEPPACEHGHILKEGISKGGKPYYGYVCKAKQCDAKWAKLTANGKWYFEGGE
metazooDRAFT_13329833	F007469	AGGAGG	MGELQIIDGSGLTSTFTDAGVKVEPSTQYCDMCNDDRLLHEGDLLRCYNCHAINRIPYHA
metazooDRAFT_13329834	F002162	N/A	MPNYEYECPGEGVVIVMDLPMEHKTPNCQVCGAAMKRIYTAVPFI