Scaffold metazooDRAFT_1276178

Overview

Basic Information

• Taxon OID: 3300002202
• Scaffold ID: metazooDRAFT_1276178
• Source Dataset Name: Freshwater microbial communities from San Paulo Zoo lake, Brazil - SEP 2012
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1439
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Lake → Freshwater Microbial Community From Sao Paulo Zoo Lake, Brazil

Source Dataset Sampling Location

• Location Name: Sao Paulo, Brazil
• Coordinates
  • Lat. (^o): -23.651072
  • Long. (^o): -46.620675

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009887	Metagenome	311	Y
F045748	Metagenome	152	Y
F066709	Metagenome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
metazooDRAFT_12761782	F045748	AGG	LSDLTWVFKCNKCGKPMLFYEKAGFDAGEEHVVVMCVKCENTGVKARIEAMTDKSVVRCTKCGAWKIESGSCYTCKKTNALSV*
metazooDRAFT_12761783	F066709	GAG	MGNKSDWDLDLRFGQEGEVAANALLTAPIETVEVKRDRRWKDTGNLYIETECWSDVRQEWYWSGITVTKATHWSFVLEDILITVPTDKIKLAVKTYGMPKEMNRPEYSTRGYLITVDNLLRVAFV*
metazooDRAFT_12761784	F009887	GAGG	MGDMEMIDATGMRATFTDDGVVLDVVPMSECCEMCNDPRLITIDGIKKCVACGCINHIELNHHG*