Scaffold metazooDRAFT_1280400

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold metazooDRAFT_1280400

Scaffold metazooDRAFT_1280400

Overview

Basic Information
Taxon OID	3300002201 Open in IMG/M
Scaffold ID	metazooDRAFT_1280400 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from San Paulo Zoo lake, Brazil - SEP 2013
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1833
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Lake → Freshwater Microbial Community From Sao Paulo Zoo Lake, Brazil

Source Dataset Sampling Location
Location Name	Sao Paulo, Brazil
Coordinates	Lat. (^o)	-23.651072	Long. (^o)	-46.620675	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043913	Metagenome / Metatranscriptome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
metazooDRAFT_12804003	F043913	GGAGG	MAEVSWDVYDIATRIQKGDESGWRGDPQASLMFNPIAQRFEVWMVDALGEPYIACSHNRCDHTLITKLIEGDWQKGKRLHEDLMKKNRAIKDAHETAEKEKRLELADKLHWALIKDLGHLDGGNRRQYSMATKGK*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.