NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold metazooDRAFT_1231318

Scaffold metazooDRAFT_1231318


Overview

Basic Information
Taxon OID3300002195 Open in IMG/M
Scaffold IDmetazooDRAFT_1231318 Open in IMG/M
Source Dataset NameFreshwater microbial communities from San Paulo Zoo lake, Brazil - AUG 2013
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1713
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Lake → Freshwater Microbial Community From Sao Paulo Zoo Lake, Brazil

Source Dataset Sampling Location
Location NameSao Paulo, Brazil
CoordinatesLat. (o)-23.651072Long. (o)-46.620675Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013082Metagenome274Y
F077221Metagenome / Metatranscriptome117N

Sequences

Protein IDFamilyRBSSequence
metazooDRAFT_12313181F013082AGGAMSLTKTVQQEINRLLLESKINRYVVSNEAPYYYDLCSVEDKQITLDEFYKSFPYHNPDMNSEYWQTQHNRWKEIWKQDVV*
metazooDRAFT_12313184F077221AGGAGMNVQGIVKYVYDNRLTKDGTPNKFPNFKFKVGEQEIVLWSAIKPSYLEKGKKVSVTCQASKKNGSLFVQTKEDKSPMIQELPAESKPDTSFNPEELEQQLQQVAKDFDADLT

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