NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold metazooDRAFT_1222323

Scaffold metazooDRAFT_1222323


Overview

Basic Information
Taxon OID3300002195 Open in IMG/M
Scaffold IDmetazooDRAFT_1222323 Open in IMG/M
Source Dataset NameFreshwater microbial communities from San Paulo Zoo lake, Brazil - AUG 2013
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)682
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Lake → Freshwater Microbial Community From Sao Paulo Zoo Lake, Brazil

Source Dataset Sampling Location
Location NameSao Paulo, Brazil
CoordinatesLat. (o)-23.651072Long. (o)-46.620675Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003067Metagenome / Metatranscriptome509Y
F059776Metagenome / Metatranscriptome133N
F063488Metagenome / Metatranscriptome129N

Sequences

Protein IDFamilyRBSSequence
metazooDRAFT_12223231F063488GAGGMSFLDGYEDVNARIKRVRQEYPELRLVAYIEDIDLVTGYILVRAEAYKTYADDKPSAVDYAYEVRTERGVNANFFVENCVT
metazooDRAFT_12223232F059776AGGMLIDLAVIIFTVLMVGAFMLAAYHTGYREGHGDGYLRGRNIAKALREAERK*
metazooDRAFT_12223233F003067N/AICSLLGAGFALVRHLVKYYLSELRPDGNGNHNLRGRVERIEIRVDRIYEMLLEDRLSK*
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