Scaffold LCLV3ORF_1002750

Overview

Basic Information

• Taxon OID: 3300002191
• Scaffold ID: LCLV3ORF_1002750
• Source Dataset Name: LCL_V3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2510
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The Red Sea

Source Dataset Sampling Location

• Location Name: Red Sea
• Coordinates
  • Lat. (^o): 21.34383
  • Long. (^o): 38.07683

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038914	Metagenome	165	Y
F076631	Metagenome	118	Y
F104018	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
LCLV3ORF_10027501	F076631	N/A	EVIVKRIREQTLIDFEEFMLPQARENFQKFWSGAMGNAAKELKKSEEGGQLALMSNMASELSGQPWYVQAAASKLMPIIQEAATKEGKPKPKQDLGMGLRK*
LCLV3ORF_10027503	F104018	AGGA	VVQLVKILSRGEGVIKDVTDGQLGEAFSTLSSNAVDMIGSDAGRKTLVGASLVAMAGAFARRQFPNLKLGGSKLYFRL*
LCLV3ORF_10027507	F038914	N/A	MSLGPSQSILRVKDGYIYGWSGSKALTSSAVNLLDYTNPPSFYLTRV