Scaffold LCLV3ORF_1000346

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold LCLV3ORF_1000346

Scaffold LCLV3ORF_1000346

Overview

Basic Information
Taxon OID	3300002191 Open in IMG/M
Scaffold ID	LCLV3ORF_1000346 Open in IMG/M
Source Dataset Name	LCL_V3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	11828
Total Scaffold Genes	26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	22 (84.62%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Archaea → environmental samples → uncultured archaeon	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The Red Sea

Source Dataset Sampling Location
Location Name	Red Sea
Coordinates	Lat. (^o)	21.34383	Long. (^o)	38.07683	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F068204	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
LCLV3ORF_100034611	F068204	GGAGG	MRLAYKVLIGLGIAFIALFGIPATVAAATGKSEALKGLIQTLKHILGAHKETLEAMIKAYKEFLASL*

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