Scaffold JGI24724J26744_10002178

Overview

Basic Information

• Taxon OID: 3300002180
• Scaffold ID: JGI24724J26744_10002178
• Source Dataset Name: Oil polluted marine microbial communities from Coal Oil Point, Santa Barbara, California, USA - Sample 7
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13103
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (91.18%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oil Seeps → Unclassified → Marine → Marine Microbial Communities From The Santa Barbara Channel Oil Seeps

Source Dataset Sampling Location

• Location Name: Coal Oil Point, Santa Barbara, CA
• Coordinates
  • Lat. (^o): 34.39225
  • Long. (^o): -119.845662

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039402	Metagenome / Metatranscriptome	164	Y
F071374	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24724J26744_1000217810	F071374	AGGAGG	MDLKEAIEWLHNKWSMTNIIPQYPLETWQVRIAEADAAMIQQVYWIVKAYEDLKTLK*
JGI24724J26744_100021787	F039402	AGGAG	MSLTDYSDLEQEIKDAPEPKILPVGSEVKARIISVRSGISDKNDCVWYQPVFDVPDDPLVIEFNTFFWELDRDKLTEKQFARSISDFQKFAKCFDIDYSRPFSWEDDLIGKEGWVILGVKKDDTYGDGNTVKKFIMPR*