Scaffold JGI24820J26691_1000078

Overview

Basic Information

• Taxon OID: 3300002176
• Scaffold ID: JGI24820J26691_1000078
• Source Dataset Name: Marine microbial communities from oxygen minimum zone in mesopelagic equatorial Pacific - METZYME_5_50m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23571
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (64.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Oxygen Minimum Zone In The Mesopelagic Equatorial Pacific

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 0.0
  • Long. (^o): -158.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015078	Metagenome	257	Y
F043887	Metagenome	155	Y
F060050	Metagenome	133	Y
F068727	Metagenome / Metatranscriptome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24820J26691_100007810	F060050	AGGTGG	MTDTQKLERLAFLANLPYCKHTSEDWAEELALECELQDHPNYKSYLDQ*
JGI24820J26691_100007815	F015078	N/A	MTTITEQKFTCNVNYQFDISLDDLRCLFCTMGQGVNYWACEVTIGNIEEEEDEDGNIWFKDNQEYECEGCCSWLKDLTLDSPIKIEDCEDDKHEFKVQDVLTTIEKIISGKTDLNKHDCGEVFHAFTNNDLGHIDSSIADSILQIMTYGTLVYG*
JGI24820J26691_10000783	F043887	GGAG	MDESTMLKIARYKCQLAELDRQWWFEDLDSKFWQVNHDRIKAEIKRLEND*
JGI24820J26691_10000789	F068727	N/A	MRKFTVTIYANSEYSVRERLQEIDHSISNIVWPWPSNIDSSKTRTKKLSGRIDEEKQHLLSDYEYDKEDPTWSNCNPMVTTGRWKMEVVPDQDYVNFQDSEEL*