Scaffold JGI20166J26741_11612489

Overview

Basic Information

• Taxon OID: 3300002175
• Scaffold ID: JGI20166J26741_11612489
• Source Dataset Name: Cubitermes ugandensis P5 segment gut microbial communities from Kakamega Forest, Kenya - Cu122 P5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1257
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location

• Location Name: Kakamega Forest, Kenya
• Coordinates
  • Lat. (^o): 0.2917
  • Long. (^o): 34.856

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000003	Metagenome	14941	Y
F039193	Metagenome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI20166J26741_116124891	F039193	N/A	VIKTSQLMLYREIIAICSQIHTKHTNTLCGQNADFGNVTAGDTYSDHWALEG*
JGI20166J26741_116124892	F039193	GAGG	MSVIKTSLLMLYREITAVCSEIHTKHINTMCGQNVEFLNVTAGGTYSDH*
JGI20166J26741_116124893	F039193	GAGG	MSVIKTSQLMLYREIIAVCSEIHTKHINTLWGQNVEFVNVTAGGTYSDHWALEG*
JGI20166J26741_116124894	F000003	GGAGG	MSVIKTSQLMLYREIIAICSQIHTKHTNTLCGQNTEFVNVKLVVHIMTIGL*