Scaffold JGI20166J26741_11535856

Overview

Basic Information

• Taxon OID: 3300002175
• Scaffold ID: JGI20166J26741_11535856
• Source Dataset Name: Cubitermes ugandensis P5 segment gut microbial communities from Kakamega Forest, Kenya - Cu122 P5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1435
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Araneae → Araneomorphae → Entelegynae → Orbiculariae → Araneoidea → Nephilidae → Trichonephila → Trichonephila clavipes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location

• Location Name: Kakamega Forest, Kenya
• Coordinates
  • Lat. (^o): 0.2917
  • Long. (^o): 34.856

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000520	Metagenome	1059	Y
F064185	Metagenome	129	N
F070265	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI20166J26741_115358561	F000520	N/A	MVGTSIVATIYLQLIQNRYMFRSFTVLQCSHQHCVQPV
JGI20166J26741_115358562	F070265	N/A	MNCLYITLFFNTVAGIVQTYIKSWNQLLYPRVIEVCRLKKVFRDQRRPTAPLFVVNISPSFEEFTAPLRHILPIHNVTINSNNLFVNFRWTFTFCFEKSYDGTHLVFGGTLDRRCHFKHVSLKQNPFYHC*
JGI20166J26741_115358563	F064185	AGG	MSYIYGAPSKARNANVVYIYGPTFGNAETVSFYLPHNVSTLNQCREVSCVTFVCKHFAS*