Scaffold JGI20166J26741_10236139

Overview

Basic Information

• Taxon OID: 3300002175
• Scaffold ID: JGI20166J26741_10236139
• Source Dataset Name: Cubitermes ugandensis P5 segment gut microbial communities from Kakamega Forest, Kenya - Cu122 P5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2574
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location

• Location Name: Kakamega Forest, Kenya
• Coordinates
  • Lat. (^o): 0.2917
  • Long. (^o): 34.856

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014030	Metagenome	266	Y
F065899	Metagenome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI20166J26741_102361391	F014030	AGGA	MIRITAEQTLEIDEEVCIDWQKAFDRVNWTKLMQILKRTGIDWRERRLIS
JGI20166J26741_102361394	F065899	GGAG	LDYILVKHRFRNSVKDVQTLPGAHIDSEHNLLVAKVRTRLKEIIRFQKSRPRWDLEKLYAQRQIVQDTLEEKLGAIKCESGNAEV*