Scaffold JGI20166J26741_10156039

Overview

Basic Information

• Taxon OID: 3300002175
• Scaffold ID: JGI20166J26741_10156039
• Source Dataset Name: Cubitermes ugandensis P5 segment gut microbial communities from Kakamega Forest, Kenya - Cu122 P5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2661
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location

• Location Name: Kakamega Forest, Kenya
• Coordinates
  • Lat. (^o): 0.2917
  • Long. (^o): 34.856

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000193	Metagenome	1662	Y
F002855	Metagenome	526	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI20166J26741_101560391	F002855	AGTAG	MYIHIYTGWRTKCHTIDCARNTFLLLQKHLTSGTVILIGWKIVPNEEHVQCDHRFASQSLANEPLHSSQLFDTSLQKA
JGI20166J26741_101560394	F000193	AGGA	MFQFTRKPSSGSHSQYLVKITHLVQSGYVELVQDIISVMAAYYDL*
JGI20166J26741_101560395	F000193	AGGA	MFWFTRKPSSGSHSQYLAKITHLVQSGYVEPVQDVISVMAAYCDL*