Scaffold JGI20166J26741_10044939

Overview

Basic Information

• Taxon OID: 3300002175
• Scaffold ID: JGI20166J26741_10044939
• Source Dataset Name: Cubitermes ugandensis P5 segment gut microbial communities from Kakamega Forest, Kenya - Cu122 P5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2796
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location

• Location Name: Kakamega Forest, Kenya
• Coordinates
  • Lat. (^o): 0.2917
  • Long. (^o): 34.856

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000731	Metagenome	916	Y
F010772	Metagenome	299	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI20166J26741_100449391	F010772	N/A	ETTIRYKISLVQLITNLNVILYLSTCHTVYISVLILFKIMP*
JGI20166J26741_100449392	F000731	N/A	VLGTTVPAGVERHLYPAHCGAVLGPWACQVRRNEIADKLARDGSVQRFVGPEPSLGVSRQNIRRKIKRWMDNQRLVMWLDPCSTQRQARELISGPDLATRARLLSFSRTQTRVVIGRLTGHNTLRGHLYIMGLSHNHTCRMCGTEEETSVHILCECEALASLRHSYLGSFLDPEDIRKISIGAIWNFAKGTGLL*