NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold JGI24709J26583_10137794

Scaffold JGI24709J26583_10137794


Overview

Basic Information
Taxon OID3300002173 Open in IMG/M
Scaffold IDJGI24709J26583_10137794 Open in IMG/M
Source Dataset NameBiogas fermentation microbial communities from Germany - Plant 2 DNA1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)722
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Biotransformation → Mixed Alcohol Bioreactor → Unclassified → Unclassified → Biogas Fermentantion → Biogas Fermentation Microbial Communities From Biogas Plants In Germany

Source Dataset Sampling Location
Location NameBielefeld, North Rhine-Westphalia, Germany
CoordinatesLat. (o)52.0385Long. (o)8.4956Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F085741Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
JGI24709J26583_101377941F085741N/ASKTIEAVSGGIYNIDCDYNNEERSFKIYFYSVFVDKPTIPTITYIGDETFEYGNVGLFVRSSSVGIGNVDVVFWEMEVTDSMIYEKAGYPFTVLTGTSHGGTNGNQVIKIFDGIIGEDIDIGRYNLIVQTISTSAASELTFSFVNLTDDTTLAIDTSAKSETIGGDAVLTTYNHVIEFKESDIGDNAVITVNKSINGYYPLNLITYAALIPISNTEGSEIITPTNLSFASFNEQNYYRNL

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.