NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24709J26583_10092493

Scaffold JGI24709J26583_10092493


Overview

Basic Information
Taxon OID3300002173 Open in IMG/M
Scaffold IDJGI24709J26583_10092493 Open in IMG/M
Source Dataset NameBiogas fermentation microbial communities from Germany - Plant 2 DNA1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1003
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → unclassified Alcaligenaceae → Alcaligenaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Biotransformation → Mixed Alcohol Bioreactor → Unclassified → Unclassified → Biogas Fermentantion → Biogas Fermentation Microbial Communities From Biogas Plants In Germany

Source Dataset Sampling Location
Location NameBielefeld, North Rhine-Westphalia, Germany
CoordinatesLat. (o)52.0385Long. (o)8.4956Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022612Metagenome / Metatranscriptome213Y
F048731Metagenome / Metatranscriptome147Y

Sequences

Protein IDFamilyRBSSequence
JGI24709J26583_100924931F048731AGGAGGMIMKNALKYALSISEDPIQIKKNVEEYMAAIGYDRRYKFKWRALSGNAKYTSSGIFEFAGQRYYFSKDSGELELERI*
JGI24709J26583_100924932F022612AGGAGGMRNINTGKYTRIRKDVARRLFKEGRIIYLTPSNVVASDSNMWIKPCAISNRSERDFDDIVNNFEFYNCCYELGYYTNFWINEEEE*

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