NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24709J26583_10014817

Scaffold JGI24709J26583_10014817


Overview

Basic Information
Taxon OID3300002173 Open in IMG/M
Scaffold IDJGI24709J26583_10014817 Open in IMG/M
Source Dataset NameBiogas fermentation microbial communities from Germany - Plant 2 DNA1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4420
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Biotransformation → Mixed Alcohol Bioreactor → Unclassified → Unclassified → Biogas Fermentantion → Biogas Fermentation Microbial Communities From Biogas Plants In Germany

Source Dataset Sampling Location
Location NameBielefeld, North Rhine-Westphalia, Germany
CoordinatesLat. (o)52.0385Long. (o)8.4956Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029085Metagenome / Metatranscriptome189N
F047639Metagenome / Metatranscriptome149Y

Sequences

Protein IDFamilyRBSSequence
JGI24709J26583_100148173F047639AGGAGMRFLNKHKYLRVIKFHSDKSSTITYHLTSKFTPNFLINPDHIFLHNGYRTVVITDKSAETINPLDFESKFNSSDFQTAIESKLIRDTFSTLKHNLFDKQTILLILNLVITLGILYFLLKSQGVI*
JGI24709J26583_100148174F029085AGGAGMKKVKEDKLKIDELLEENISEQLENGGSDLVSLIAISELTNLDKLKVITRIKEGQVPILTKLYMYAETFNIPFIKNMADNILQLQVSIRGLGRKELVNIVRESTPTEVKRGLFGTKEVFR

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