Scaffold JGI24712J26585_10039146

Overview

Basic Information

• Taxon OID: 3300002168
• Scaffold ID: JGI24712J26585_10039146
• Source Dataset Name: Biogas fermentation microbial communities from Germany - Plant 3 DNA2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2180
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → unclassified Thermoplasmata → Thermoplasmata archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Biotransformation → Mixed Alcohol Bioreactor → Unclassified → Unclassified → Biogas Fermentantion → Biogas Fermentation Microbial Communities From Biogas Plants In Germany

Source Dataset Sampling Location

• Location Name: Bielefeld, North Rhine-Westphalia, Germany
• Coordinates
  • Lat. (^o): 52.0385
  • Long. (^o): 8.4956
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045597	Metagenome / Metatranscriptome	152	Y
F103107	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24712J26585_100391461	F045597	AGGAGG	MRFNVWITKPPTLISDSAGHGARRTYAAVARVRCQGKGFMDVVAVYSLGYYDQHGYVESLDRLLGLLVVSAPVSNPMLTLARFPEELPAGWEEAWEAVEAAVLVLPE*
JGI24712J26585_100391465	F103107	AGGAGG	MAKAKIAYWIDEKTGGYVELAGTKWDGDLSDKELLAKAQEVAEEEGMDLSYGKIIIETVEEEEE*