Scaffold JGI24712J26585_10008319

Overview

Basic Information

• Taxon OID: 3300002168
• Scaffold ID: JGI24712J26585_10008319
• Source Dataset Name: Biogas fermentation microbial communities from Germany - Plant 3 DNA2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7034
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (100.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Syntrophomonadaceae → unclassified Syntrophomonadaceae → Syntrophomonadaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Biotransformation → Mixed Alcohol Bioreactor → Unclassified → Unclassified → Biogas Fermentantion → Biogas Fermentation Microbial Communities From Biogas Plants In Germany

Source Dataset Sampling Location

• Location Name: Bielefeld, North Rhine-Westphalia, Germany
• Coordinates
  • Lat. (^o): 52.0385
  • Long. (^o): 8.4956
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029451	Metagenome / Metatranscriptome	188	N
F036251	Metagenome / Metatranscriptome	170	Y
F040648	Metagenome / Metatranscriptome	161	Y
F054066	Metagenome / Metatranscriptome	140	N
F101228	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24712J26585_100083191	F036251	GAGG	MQERQTVLFSETGVTSTMDTTERVSLKDGTVFVAQRIEIRPSTRYGEYVVFDGEDLDGKEYHAYSVSSVILQQAKALLEKYGGKDGSLSHDILCTVKAFVSETTGRRFYTLV*
JGI24712J26585_100083192	F040648	GAG	MTGNVINNEEVQSEIEPLLDTAREGVTALETASSLIHIPTRDKAKIQTAVKKMRQAAVYIEDRAHNLSVRSDVITKSAVNEALKGATQAQIDRAYAILSGQEAVEDVPADEDGAYLPPVEWDEG*
JGI24712J26585_100083196	F101228	GAGG	MDVSYGNMNRFHNLWNWIANRWAYFAVGVLACLLIYYITGSTLQAVYGIVLLMCMWIGILWIDRLPRKDQIWWQRLVGITVILLAVTIAIGHNPVNALMITGDPAGDQIHWEIADGEPPYTVYVNGIEIVTGYPGTVLSTDAEPGRQYTAVVMDNETIADATVTGEYYTYPMWVWMLIALLVACLIVSIWLPYAAFGAAIAGGFLLLLIAPNPDYAAYLRIFAGAAFIVGLAGLAGRLQG
JGI24712J26585_100083198	F054066	AGG	MFGISRKPKELNRFRVGKGSPGLKAVMYRLMNKSYLDIRIYRGYREVTRIVTPDTGMRRFVVDGVGAFVMPTEDQMLRQLHDRYALYINYNINSSAPGEVTDELEPVAFVYPPLSPAEFQTELEAQTVADLLAETEKDMSWIWLLAGGAVLIFILILLFGGV*
JGI24712J26585_100083199	F029451	GGAGG	MAVDFEDLIASTSSNAGKPSIIEALLSTVDAIFTNNRMLQRSRLSSRNIRGVVRVIGSQAFLRARLERSYKPFLDPDTGEFTYNRYDNRVLTAVCEGALSGRISLDGKSRDEIIRIFQAVGNTGQEQPVGRGGGILGRFDY*