Basic Information | |
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Taxon OID | 3300002168 Open in IMG/M |
Scaffold ID | JGI24712J26585_10008319 Open in IMG/M |
Source Dataset Name | Biogas fermentation microbial communities from Germany - Plant 3 DNA2 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 7034 |
Total Scaffold Genes | 10 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (100.00%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Syntrophomonadaceae → unclassified Syntrophomonadaceae → Syntrophomonadaceae bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Engineered → Biotransformation → Mixed Alcohol Bioreactor → Unclassified → Unclassified → Biogas Fermentantion → Biogas Fermentation Microbial Communities From Biogas Plants In Germany |
Source Dataset Sampling Location | ||||||||
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Location Name | Bielefeld, North Rhine-Westphalia, Germany | |||||||
Coordinates | Lat. (o) | 52.0385 | Long. (o) | 8.4956 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F029451 | Metagenome / Metatranscriptome | 188 | N |
F036251 | Metagenome / Metatranscriptome | 170 | Y |
F040648 | Metagenome / Metatranscriptome | 161 | Y |
F054066 | Metagenome / Metatranscriptome | 140 | N |
F101228 | Metagenome / Metatranscriptome | 102 | Y |
Protein ID | Family | RBS | Sequence |
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JGI24712J26585_100083191 | F036251 | GAGG | MQERQTVLFSETGVTSTMDTTERVSLKDGTVFVAQRIEIRPSTRYGEYVVFDGEDLDGKEYHAYSVSSVILQQAKALLEKYGGKDGSLSHDILCTVKAFVSETTGRRFYTLV* |
JGI24712J26585_100083192 | F040648 | GAG | MTGNVINNEEVQSEIEPLLDTAREGVTALETASSLIHIPTRDKAKIQTAVKKMRQAAVYIEDRAHNLSVRSDVITKSAVNEALKGATQAQIDRAYAILSGQEAVEDVPADEDGAYLPPVEWDEG* |
JGI24712J26585_100083196 | F101228 | GAGG | MDVSYGNMNRFHNLWNWIANRWAYFAVGVLACLLIYYITGSTLQAVYGIVLLMCMWIGILWIDRLPRKDQIWWQRLVGITVILLAVTIAIGHNPVNALMITGDPAGDQIHWEIADGEPPYTVYVNGIEIVTGYPGTVLSTDAEPGRQYTAVVMDNETIADATVTGEYYTYPMWVWMLIALLVACLIVSIWLPYAAFGAAIAGGFLLLLIAPNPDYAAYLRIFAGAAFIVGLAGLAGRLQG |
JGI24712J26585_100083198 | F054066 | AGG | MFGISRKPKELNRFRVGKGSPGLKAVMYRLMNKSYLDIRIYRGYREVTRIVTPDTGMRRFVVDGVGAFVMPTEDQMLRQLHDRYALYINYNINSSAPGEVTDELEPVAFVYPPLSPAEFQTELEAQTVADLLAETEKDMSWIWLLAGGAVLIFILILLFGGV* |
JGI24712J26585_100083199 | F029451 | GGAGG | MAVDFEDLIASTSSNAGKPSIIEALLSTVDAIFTNNRMLQRSRLSSRNIRGVVRVIGSQAFLRARLERSYKPFLDPDTGEFTYNRYDNRVLTAVCEGALSGRISLDGKSRDEIIRIFQAVGNTGQEQPVGRGGGILGRFDY* |
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